Freebayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment.
You can find documentation on the system, with the command :
module help freebayes
The manual is on the web at the original home page (https://github.com/freebayes/freebayes/releases)
CINECA consultants can be reached through the address: superc@cineca.it